Transcript: LINC00313:33

Basic information

LNCipedia transcript ID: LINC00313:33 
LNCipedia gene ID: LINC00313
Location (hg38): chr21:43467612-43478142
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4567 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000185186.4|MICT00000227368.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.3227 non-coding 
CPAT coding probability 4.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00313:33 no no no no

Available literature

  1. Li (2015), Differentially expressed protein-coding genes and long noncoding RNA in early-stage lung cancer., Tumour Biol.
  2. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00313:33
5.0 LINC00313:33
5.1 LINC00313:33
5.2 LINC00313:33