Transcript: LINC00316:1

Basic information

LNCipedia transcript ID: LINC00316:1 
HGNC Gene Symbol: LINC00316    
HGNC Full Gene Name: long intergenic non-protein coding RNA 316
Ensembl Gene ID: ENSG00000237664
Ensembl Transcript ID: ENST00000416722
RefSeq ID: NR_103811
Location (hg38): chr21:45338590-45341990
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 455 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00028959; ENST00000416722; ENST00000416722.1; LINC00316-001; OTTHUMT00000206824.1; NONHSAT082952; NR_103811; NR_103811.1
Alternative gene names: XLOC_014125; linc-POFUT2-1; ENSG00000237664; NCRNA00316; ENSG00000237664.1; LINC00316; OTTHUMG00000090404.1; PRED59


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.8578 non-coding 
CPAT coding probability 8.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00316:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POFUT2-2:1
3.1 lnc-POFUT2-2:1
4.0 LINC00316:1
4.1 LINC00316:1
5.0 LINC00316:1
5.1 LINC00316:1
5.2 LINC00316:1