Transcript: LINC00319:16

Basic information

LNCipedia transcript ID: LINC00319:16 
LNCipedia gene ID: LINC00319
Location (hg38): chr21:43465129-43467875
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 971 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029049; NONHSAT082424
Alternative gene names: XLOC_013965; linc-RRP1B-1; PRED49; FLJ38036


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.8607 non-coding 
CPAT coding probability 3.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00319:16 no no no no

Available literature

  1. Zhou (2017), Long Intergenic Noncoding RNA 319 (linc00319) Promotes Cell Proliferation and Invasion in Lung Cancer Cells by Directly Downregulating the Tumor Suppressor MiR-32., Oncol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RRP1B-1:1
3.1 lnc-RRP1B-2:1
4.0 lnc-RRP1B-2:1
4.1 LINC00319:16
5.0 LINC00319:16
5.1 LINC00319:16
5.2 LINC00319:16