Transcript: LINC00319:17

Basic information

LNCipedia transcript ID: LINC00319:17 
LNCipedia gene ID: LINC00319
Ensembl Gene ID: ENSG00000223975
Ensembl Transcript ID: ENST00000436359
Location (hg38): chr21:43465309-43467298
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 280 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028853; ENST00000436359; ENST00000436359.1; AP001048.4-001; OTTHUMT00000195650.1
Alternative gene names: XLOC_013965; linc-RRP1B-1; ENSG00000223975; AP001048.4; ENSG00000223975.1; OTTHUMG00000086871.1; PRED49; FLJ38036; AP001048.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.8607 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00319:17 no no no no

Available literature

  1. Zhou (2017), Long Intergenic Noncoding RNA 319 (linc00319) Promotes Cell Proliferation and Invasion in Lung Cancer Cells by Directly Downregulating the Tumor Suppressor MiR-32., Oncol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RRP1B-1:2
3.1 lnc-RRP1B-2:2
4.0 lnc-RRP1B-2:2
4.1 LINC00319:17
5.0 LINC00319:17
5.1 LINC00319:17
5.2 LINC00319:17