Transcript: LINC00319:2

Basic information

LNCipedia transcript ID: LINC00319:2 
HGNC Gene Symbol: LINC00319    
HGNC Full Gene Name: long intergenic non-protein coding RNA 319
Ensembl Gene ID: ENSG00000188660
Ensembl Transcript ID: ENST00000448049
Location (hg38): chr21:43446601-43453893
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3507 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028852; ENST00000448049; ENST00000448049.1; LINC00319-001; OTTHUMT00000195624.1; NONHSAT082408
Alternative gene names: XLOC_013964; linc-RRP1B-2; ENSG00000188660; NCRNA00319; ENSG00000188660.3; LINC00319; OTTHUMG00000086866.1; PRED49; FLJ38036


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.8364 non-coding 
CPAT coding probability 53.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00319:2 no no no no

Available literature

  1. Zhou (2017), Long Intergenic Noncoding RNA 319 (linc00319) Promotes Cell Proliferation and Invasion in Lung Cancer Cells by Directly Downregulating the Tumor Suppressor MiR-32., Oncol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RRP1B-2:1
3.1 lnc-RRP1B-3:1
4.0 LINC00319:2
4.1 LINC00319:2
5.0 LINC00319:2
5.1 LINC00319:2
5.2 LINC00319:2