Transcript: LINC00322:1

Basic information

LNCipedia transcript ID: LINC00322:1 
HGNC Gene Symbol: LINC00322    
HGNC Full Gene Name: long intergenic non-protein coding RNA 322
Ensembl Gene ID: ENSG00000237864
Ensembl Transcript ID: ENST00000450205
Location (hg38): chr21:43322417-43332039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 699 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028945; ENST00000450205.1; LINC00322-001; OTTHUMT00000195622.1
Alternative gene names: XLOC_014101; linc-U2AF1-4; ENSG00000237864.1; LINC00322; OTTHUMG00000086864.1; FLJ16545


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.411 non-coding 
CPAT coding probability 5.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00322:1 no no no no

Available literature

  1. Olsen (2006), Global, in vivo, and site-specific phosphorylation dynamics in signaling networks., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIK1-6:1
3.1 lnc-SIK1-6:1
4.0 LINC00322:1
4.1 LINC00322:1
5.0 LINC00322:1
5.1 LINC00322:1
5.2 LINC00322:1