Transcript: LINC00330:1

Basic information

LNCipedia transcript ID: LINC00330:1 
HGNC Gene Symbol: LINC00330    
HGNC Full Gene Name: long intergenic non-protein coding RNA 330
Ensembl Gene ID: ENSG00000235097
Ensembl Transcript ID: ENST00000414562
Location (hg38): chr13:44799503-44809630
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2036 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021643; ENST00000414562; ENST00000414562.1; LINC00330-001; OTTHUMT00000044748.1
Alternative gene names: XLOC_010589; linc-TSC22D1-2; ENSG00000235097; NCRNA00330; ENSG00000235097.1; LINC00330; OTTHUMG00000016840.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 51.7361 non-coding 
CPAT coding probability 73.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00330:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUFIP1-2:1
3.1 lnc-NUFIP1-2:1
4.0 LINC00330:1
4.1 LINC00330:1
5.0 LINC00330:1
5.1 LINC00330:1
5.2 LINC00330:1