Transcript: LINC00332:1

Basic information

LNCipedia transcript ID: LINC00332:1 
HGNC Gene Symbol: LINC00332    
HGNC Full Gene Name: long intergenic non-protein coding RNA 332
Ensembl Gene ID: ENSG00000230710
Ensembl Transcript ID: ENST00000455241
Location (hg38): chr13:40181809-40189028
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 834 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021540; ENST00000455241; ENST00000455241.1; LINC00332-001; OTTHUMT00000044627.1
Alternative gene names: XLOC_010356; linc-SLC25A15-2; ENSG00000230710; NCRNA00332; ENSG00000230710.1; LINC00332; OTTHUMG00000016770.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.8523 non-coding 
CPAT coding probability 13.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00332:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COG6-3:1
3.1 lnc-COG6-3:1
4.0 LINC00332:1
4.1 LINC00332:1
5.0 LINC00332:1
5.1 LINC00332:1
5.2 LINC00332:1