Transcript: LINC00334:1

Basic information

LNCipedia transcript ID: LINC00334:1 
HGNC Gene Symbol: LINC00334    
HGNC Full Gene Name: long intergenic non-protein coding RNA 334
Ensembl Gene ID: ENSG00000182586
Ensembl Transcript ID: ENST00000584169
Location (hg38): chr21:45234340-45257267
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 589 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584169.1; LINC00334-002; OTTHUMT00000446101.1; NONHSAT082920; ENST00000584169.5
Alternative gene names: ENSG00000182586.3; LINC00334; OTTHUMG00000084875.2; ENSG00000182586.7; ; ENSG00000182586.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.1153 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00334:1 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADARB1-2:1
4.0 LINC00334:1
4.1 LINC00334:1
5.0 LINC00334:1
5.1 LINC00334:1
5.2 LINC00334:1