Transcript: LINC00334:2

Basic information

LNCipedia transcript ID: LINC00334:2 
HGNC Gene Symbol: LINC00334    
HGNC Full Gene Name: long intergenic non-protein coding RNA 334
Ensembl Gene ID: ENSG00000182586
Ensembl Transcript ID: ENST00000328344
Location (hg38): chr21:45234352-45258730
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 530 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028775; ENST00000328344.2; LINC00334-001; OTTHUMT00000192579.1; NONHSAT082921
Alternative gene names: XLOC_013979; linc-COL18A1-6; ENSG00000182586.3; LINC00334; OTTHUMG00000084875.2; ENSG00000182586.7; ; ENSG00000182586.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.7471 non-coding 
CPAT coding probability 35.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00334:2 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ADARB1-2:1
3.1 lnc-ADARB1-2:2
4.0 LINC00334:2
4.1 LINC00334:2
5.0 LINC00334:2
5.1 LINC00334:2
5.2 LINC00334:2