Transcript: LINC00334:3

Basic information

LNCipedia transcript ID: LINC00334:3 
HGNC Gene Symbol: LINC00334    
HGNC Full Gene Name: long intergenic non-protein coding RNA 334
Ensembl Gene ID: ENSG00000182586
Ensembl Transcript ID: ENST00000638500
Location (hg38): chr21:45234340-45264548
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1377 bp
Exons: 4
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000638500.1
Alternative gene names: ENSG00000182586.8; LINC00334


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.7471 non-coding 
CPAT coding probability 24.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00334:3 yes no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00334:3
5.1 LINC00334:3
5.2 LINC00334:3