Transcript: LINC00337:4

Basic information

LNCipedia transcript ID: LINC00337:4 
HGNC Gene Symbol: LINC00337    
HGNC Full Gene Name: long intergenic non-protein coding RNA 337
Ensembl Gene ID: ENSG00000225077
Ensembl Transcript ID: ENST00000429480
Location (hg38): chr1:6237771-6239444
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1302 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429480.2; LINC00337-001; OTTHUMT00000003686.1; NONHSAT000637
Alternative gene names: ENSG00000225077.2; LINC00337; OTTHUMG00000001255.3; MGC40168


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.926 non-coding 
CPAT coding probability 12.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00337:4 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HES3-1:2
4.0 LINC00337:4
4.1 LINC00337:4
5.0 LINC00337:4
5.1 LINC00337:4
5.2 LINC00337:4