Transcript: LINC00342:6

Basic information

LNCipedia transcript ID: LINC00342:6 
HGNC Gene Symbol: LINC00342    
HGNC Full Gene Name: long intergenic non-protein coding RNA 342
Ensembl Gene ID: ENSG00000232931
Ensembl Transcript ID: ENST00000448494
Location (hg38): chr2:95807118-95816215
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2351 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448494; ENST00000448494.1; LINC00342-002; OTTHUMT00000338690.1
Alternative gene names: ENSG00000232931; NCRNA00342; ENSG00000232931.1; LINC00342; OTTHUMG00000155186.1; ENSG00000232931.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.9144 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00342:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD36C-1:1
3.1 lnc-ANKRD36C-1:1
4.0 LINC00342:6
4.1 LINC00342:6
5.0 LINC00342:6
5.1 LINC00342:6
5.2 LINC00342:6