Transcript: LINC00343:16

Basic information

LNCipedia transcript ID: LINC00343:16 
LNCipedia gene ID: LINC00343
Location (hg38): chr13:105707476-105761398
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 580 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000415294; ENST00000415294.1; LINC00343-002; OTTHUMT00000045721.1
Alternative gene names: ENSG00000226620; NCRNA00343; ENSG00000226620.1; LINC00343; OTTHUMG00000017317.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.0673 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00343:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DAOA-3:2
3.1 lnc-DAOA-3:2
4.0 LINC00343:16
4.1 LINC00343:16
5.0 LINC00343:16
5.1 LINC00343:16
5.2 LINC00343:16