Transcript: LINC00350:1

Basic information

LNCipedia transcript ID: LINC00350:1 
HGNC Gene Symbol: LINC00350    
HGNC Full Gene Name: long intergenic non-protein coding RNA 350
Ensembl Gene ID: ENSG00000225316
Ensembl Transcript ID: ENST00000438640
Location (hg38): chr13:19587118-19588350
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 422 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021526; ENST00000438640; ENST00000438640.1; LINC00350-001; OTTHUMT00000044027.1; NONHSAT032277
Alternative gene names: XLOC_010291; linc-MPHOSPH8-1; ENSG00000225316; RP11-76K19.5; ENSG00000225316.1; LINC00350; OTTHUMG00000016497.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.6698 non-coding 
CPAT coding probability 9.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00350:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MPHOSPH8-1:1
3.1 lnc-MPHOSPH8-2:1
4.0 LINC00350:1
4.1 LINC00350:1
5.0 LINC00350:1
5.1 LINC00350:1
5.2 LINC00350:1