Transcript: LINC00352:1

Basic information

LNCipedia transcript ID: LINC00352:1 
HGNC Gene Symbol: LINC00352    
HGNC Full Gene Name: long intergenic non-protein coding RNA 352
Ensembl Gene ID: ENSG00000227893
Ensembl Transcript ID: ENST00000425800
Location (hg38): chr13:23498796-23502874
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021530; ENST00000425800; ENST00000425800.1; LINC00352-001; OTTHUMT00000044155.1; NONHSAT032468
Alternative gene names: XLOC_010310; linc-TNFRSF19-3; ENSG00000227893; RP11-760M1.3; ENSG00000227893.1; LINC00352; OTTHUMG00000016567.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.9718 non-coding 
CPAT coding probability 8.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00352:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFRSF19-4:1
3.1 lnc-TNFRSF19-4:1
4.0 LINC00352:1
4.1 LINC00352:1
5.0 LINC00352:1
5.1 LINC00352:1
5.2 LINC00352:1