Transcript: LINC00354:9

Basic information

LNCipedia transcript ID: LINC00354:9 
HGNC Gene Symbol: LINC00354    
HGNC Full Gene Name: long intergenic non-protein coding RNA 354
Ensembl Gene ID: ENSG00000226903
Ensembl Transcript ID: ENST00000412119
Location (hg38): chr13:111899988-111900936
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021600; ENST00000412119; ENST00000412119.1; LINC00354-001; OTTHUMT00000045815.1; NONHSAT035242
Alternative gene names: XLOC_010503; linc-SOX1-1; ENSG00000226903; RP11-75F3.1; ENSG00000226903.1; LINC00354; OTTHUMG00000017361.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.6776 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00354:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SOX1-3:5
3.1 lnc-SOX1-4:5
4.0 LINC00354:9
4.1 LINC00354:9
5.0 LINC00354:9
5.1 LINC00354:9
5.2 LINC00354:9