Transcript: LINC00376:5

Basic information

LNCipedia transcript ID: LINC00376:5 
LNCipedia gene ID: LINC00376
Location (hg38): chr13:63183101-63227056
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00021665; ENST00000439454; ENST00000439454.1; RP11-527N12.1-001; OTTHUMT00000045193.1; NONHSAT034159
Alternative gene names: XLOC_010639; linc-PCDH20-5; ENSG00000227564; RP11-527N12.1; ENSG00000227564.1; OTTHUMG00000017020.1; LINC00376;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.074 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00376:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH20-5:1
3.1 lnc-PCDH20-5:1
4.0 LINC00376:5
4.1 LINC00376:5
5.0 LINC00376:5
5.1 LINC00376:5
5.2 LINC00376:5