Transcript: LINC00383:5

Basic information

LNCipedia transcript ID: LINC00383:5 
LNCipedia gene ID: LINC00383
Ensembl Gene ID: ENSG00000235221
Ensembl Transcript ID: ENST00000431686
Location (hg38): chr13:69311333-69322101
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 821 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021564; ENST00000431686; ENST00000431686.1; RP11-459J23.1-001; OTTHUMT00000045228.1; NONHSAT034244
Alternative gene names: XLOC_010421; linc-C13orf34-4; ENSG00000235221; RP11-459J23.1; ENSG00000235221.1; OTTHUMG00000017053.1; LINC00401; ; AL355478.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.0916 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00383:5 no no no no

Available literature

  1. Fang (2014), Long non-coding RNAs are differentially expressed in hepatocellular carcinoma cell lines with differing metastatic potential., Asian Pac. J. Cancer Prev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BORA-5:1
3.1 lnc-BORA-5:1
4.0 LINC00383:5
4.1 LINC00383:5
5.0 LINC00383:5
5.1 LINC00383:5
5.2 LINC00383:5