Transcript: LINC00395:1

Basic information

LNCipedia transcript ID: LINC00395:1 
HGNC Gene Symbol: LINC00395    
HGNC Full Gene Name: long intergenic non-protein coding RNA 395
Ensembl Gene ID: ENSG00000231061
Ensembl Transcript ID: ENST00000451570
RefSeq ID: NR_047011
Location (hg38): chr13:63667682-63738018
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021667; ENST00000451570.1; LINC00395-001; OTTHUMT00000045195.1; NONHSAT034170; NR_047011; NR_047011.1
Alternative gene names: XLOC_010643; linc-PCDH20-8; ENSG00000231061.1; LINC00395; OTTHUMG00000017022.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.264 non-coding 
CPAT coding probability 2.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00395:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCDH20-9:1
3.1 lnc-PCDH20-9:1
4.0 LINC00395:1
4.1 LINC00395:1
5.0 LINC00395:1
5.1 LINC00395:1
5.2 LINC00395:1