Transcript: LINC00400:2

Basic information

LNCipedia transcript ID: LINC00400:2 
HGNC Gene Symbol: LINC00400    
HGNC Full Gene Name: long intergenic non-protein coding RNA 400
Ensembl Gene ID: ENSG00000229928
Ensembl Transcript ID: ENST00000425609
Location (hg38): chr13:43158631-43159466
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021542; ENST00000425609; ENST00000425609.1; LINC00400-001; OTTHUMT00000044714.1; NONHSAT033457
Alternative gene names: XLOC_010366; linc-C13orf31-2; ENSG00000229928; RP11-460G11.1; ENSG00000229928.1; LINC00400; OTTHUMG00000016815.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.1055 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00400:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNAJC15-1:1
3.1 lnc-DNAJC15-1:1
4.0 LINC00400:2
4.1 LINC00400:2
5.0 LINC00400:2
5.1 LINC00400:2
5.2 LINC00400:2