Transcript: LINC00407:1

Basic information

LNCipedia transcript ID: LINC00407:1 
HGNC Gene Symbol: LINC00407    
HGNC Full Gene Name: long intergenic non-protein coding RNA 407
Ensembl Gene ID: ENSG00000237585
Ensembl Transcript ID: ENST00000426509
Location (hg38): chr13:44651812-44701016
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 295 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021544; ENST00000426509; ENST00000426509.1; RP11-442J21.1-001; OTTHUMT00000044747.1; NONHSAT033518
Alternative gene names: XLOC_010372; linc-KIAA1704; ENSG00000237585; RP11-442J21.1; ENSG00000237585.1; OTTHUMG00000016839.1; LINC00407;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -220.26 non-coding 
CPAT coding probability 1.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00407:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SERP2-1:1
3.1 lnc-SERP2-2:1
4.0 LINC00407:1
4.1 LINC00407:1
5.0 LINC00407:1
5.1 LINC00407:1
5.2 LINC00407:1