Transcript: LINC00424:1

Basic information

LNCipedia transcript ID: LINC00424:1 
HGNC Gene Symbol: LINC00424    
HGNC Full Gene Name: long intergenic non-protein coding RNA 424
Ensembl Gene ID: ENSG00000226722
Ensembl Transcript ID: ENST00000624644
RefSeq ID: NR_047040
Location (hg38): chr13:21872796-21878160
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT032410; NR_047040; ENST00000624644.1; NR_047040.1
Alternative gene names: ENSG00000226722.3; LINC00424;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.0267 non-coding 
CPAT coding probability 0.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00424:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EFHA1-2:4
4.0 LINC00424:1
4.1 LINC00424:1
5.0 LINC00424:1
5.1 LINC00424:1
5.2 LINC00424:1