Transcript: LINC00426:11

Basic information

LNCipedia transcript ID: LINC00426:11 
HGNC Gene Symbol: LINC00426    
HGNC Full Gene Name: long intergenic non-protein coding RNA 426
Ensembl Gene ID: ENSG00000238121
Ensembl Transcript ID: ENST00000447147
Location (hg38): chr13:30340270-30373899
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1589 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447147; ENST00000447147.1; LINC00426-007; OTTHUMT00000125966.1; NONHSAT032777; NR_024464; ENST00000447147.5
Alternative gene names: ENSG00000238121; RP11-374F3.4; ENSG00000238121.1; LINC00426; OTTHUMG00000016668.4; ENSG00000238121.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.9524 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00426:11 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget
  2. You (2014), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KATNAL1-3:9
3.1 lnc-KATNAL1-3:8
4.0 LINC00426:11
4.1 LINC00426:11
5.0 LINC00426:11
5.1 LINC00426:11
5.2 LINC00426:11