Transcript: LINC00426:5

Basic information

LNCipedia transcript ID: LINC00426:5 
LNCipedia gene ID: LINC00426
Location (hg38): chr13:30366969-30376941
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1264 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021956; NONHSAT032793
Alternative gene names: XLOC_010556; linc-KATNAL1-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.3374 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00426:5 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget
  2. You (2014), Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer., Indian J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KATNAL1-3:4
3.1 lnc-KATNAL1-3:3
4.0 LINC00426:5
4.1 LINC00426:5
5.0 LINC00426:5
5.1 LINC00426:5
5.2 LINC00426:5