Transcript: LINC00434:1

Basic information

LNCipedia transcript ID: LINC00434:1 
HGNC Gene Symbol: LINC00434    
HGNC Full Gene Name: long intergenic non-protein coding RNA 434
Ensembl Gene ID: ENSG00000227336
Ensembl Transcript ID: ENST00000423739
Location (hg38): chr13:60214352-60214946
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 419 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021661; ENST00000423739; ENST00000423739.1; LINC00434-001; OTTHUMT00000045171.1; NONHSAT034105
Alternative gene names: XLOC_010633; linc-DIAPH3-2; ENSG00000227336; RP11-359P14.1; ENSG00000227336.1; LINC00434; OTTHUMG00000017005.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.7664 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00434:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DIAPH3-2:1
3.1 lnc-DIAPH3-2:1
4.0 LINC00434:1
4.1 LINC00434:1
5.0 LINC00434:1
5.1 LINC00434:1
5.2 LINC00434:1