Transcript: LINC00437:2

Basic information

LNCipedia transcript ID: LINC00437:2 
HGNC Gene Symbol: LINC00437    
HGNC Full Gene Name: long intergenic non-protein coding RNA 437
Ensembl Gene ID: ENSG00000236354
Ensembl Transcript ID: ENST00000414161
Location (hg38): chr13:38533343-38545299
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 791 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021639; ENST00000414161; ENST00000414161.1; RP11-349O10.1-001; OTTHUMT00000044596.1
Alternative gene names: XLOC_010572; linc-TRPC4-2; ENSG00000236354; RP11-349O10.1; ENSG00000236354.1; OTTHUMG00000016756.1; LINC00437; TCONS_00021639


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.5045 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00437:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STOML3-2:1
3.1 lnc-STOML3-3:1
4.0 LINC00437:2
4.1 LINC00437:2
5.0 LINC00437:2
5.1 LINC00437:2
5.2 LINC00437:2