Transcript: LINC00440:1

Basic information

LNCipedia transcript ID: LINC00440:1 
HGNC Gene Symbol: LINC00440    
HGNC Full Gene Name: long intergenic non-protein coding RNA 440
Ensembl Gene ID: ENSG00000234660
Ensembl Transcript ID: ENST00000446579
Location (hg38): chr13:89273203-89280240
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 734 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021585; ENST00000446579; ENST00000446579.1; LINC00440-001; OTTHUMT00000045426.1; NONHSAT034626
Alternative gene names: XLOC_010467; linc-GPC5-4; ENSG00000234660; RP11-309H8.3; ENSG00000234660.1; LINC00440; OTTHUMG00000017175.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.0213 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00440:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLITRK5-8:1
3.1 lnc-SLITRK5-9:1
4.0 LINC00440:1
4.1 LINC00440:1
5.0 LINC00440:1
5.1 LINC00440:1
5.2 LINC00440:1