Transcript: LINC00442:5

Basic information

LNCipedia transcript ID: LINC00442:5 
LNCipedia gene ID: LINC00442
Location (hg38): chr13:19008264-19015198
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2289 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021525; ENST00000428086.1; LINC00442-001; OTTHUMT00000043998.2; NONHSAT032238
Alternative gene names: XLOC_010288; linc-MPHOSPH8-4; ENSG00000232685.2; LINC00442; OTTHUMG00000016475.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4542 non-coding 
CPAT coding probability 87.04% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00442:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-408E5.4.1-3:2
3.1 lnc-RP11-408E5.4.1-4:4
4.0 LINC00442:5
4.1 LINC00442:5
5.0 LINC00442:5
5.1 LINC00442:5
5.2 LINC00442:5