Transcript: LINC00459:1

Basic information

LNCipedia transcript ID: LINC00459:1 
HGNC Gene Symbol: LINC00459    
HGNC Full Gene Name: long intergenic non-protein coding RNA 459
Ensembl Gene ID: ENSG00000229307
Ensembl Transcript ID: ENST00000431656
Location (hg38): chr13:62323657-62328833
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 376 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431656.1; LINC00459-001; OTTHUMT00000045187.1
Alternative gene names: ENSG00000229307.1; LINC00459; OTTHUMG00000017015.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.2768 non-coding 
CPAT coding probability 43.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00459:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL445989.1-5:1
4.0 LINC00459:1
4.1 LINC00459:1
5.0 LINC00459:1
5.1 LINC00459:1
5.2 LINC00459:1