Transcript: LINC00460:6

Basic information

LNCipedia transcript ID: LINC00460:6 
LNCipedia gene ID: LINC00460
Location (hg38): chr13:106376563-106377794
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 916 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT035061; NR_034119
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.5096 non-coding 
CPAT coding probability 14.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00460:6 no no no no

Available literature

  1. Xing (2018), Long noncoding RNA LINC00460 targets miR-539/MMP-9 to promote meningioma progression and metastasis., Biomed. Pharmacother.
  2. Wang (2016), Identification of long noncoding RNAs as potential novel diagnosis and prognosis biomarkers in colorectal cancer., J. Cancer Res. Clin. Oncol.
  3. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DAOA-4:7
4.0 LINC00460:6
4.1 LINC00460:6
5.0 LINC00460:6
5.1 LINC00460:6
5.2 LINC00460:6