Transcript: LINC00469:5

Basic information

LNCipedia transcript ID: LINC00469:5 
HGNC Gene Symbol: LINC00469    
HGNC Full Gene Name: long intergenic non-protein coding RNA 469
Ensembl Gene ID: ENSG00000177338
Ensembl Transcript ID: ENST00000579749
Location (hg38): chr17:73761004-73776757
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000579749.1; LINC00469-004; OTTHUMT00000442525.1; NONHSAT055742
Alternative gene names: ENSG00000177338.8; LINC00469; OTTHUMG00000167833.3; ENSG00000177338.9; ENSG00000177338.13; FLJ40319


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -206.6902 non-coding 
CPAT coding probability 9.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00469:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SDK2-2:4
4.0 LINC00469:5
4.1 LINC00469:5
5.0 LINC00469:5
5.1 LINC00469:5
5.2 LINC00469:5