Transcript: LINC00477:1

Basic information

LNCipedia transcript ID: LINC00477:1 
HGNC Gene Symbol: LINC00477    
HGNC Full Gene Name: long intergenic non-protein coding RNA 477
Ensembl Gene ID: ENSG00000197503
Ensembl Transcript ID: ENST00000483544
RefSeq ID: NR_029451
Location (hg38): chr12:24566964-24584168
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1710 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000483544; ENST00000483544.1; LINC00477-001; OTTHUMT00000355725.1; NONHSAT027324; NR_029451; NR_029451.2
Alternative gene names: ENSG00000197503; C12orf67; ENSG00000197503.4; LINC00477; OTTHUMG00000159485.1; FLJ32894; FAM191B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.7846 non-coding 
CPAT coding probability 20.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00477:1 no no no no

Available literature

  1. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BCAT1-1:1
3.1 lnc-BCAT1-1:1
4.0 LINC00477:1
4.1 LINC00477:1
5.0 LINC00477:1
5.1 LINC00477:1
5.2 LINC00477:1