Transcript: LINC00479:1

Basic information

LNCipedia transcript ID: LINC00479:1 
HGNC Gene Symbol: LINC00479    
HGNC Full Gene Name: long intergenic non-protein coding RNA 479
Ensembl Gene ID: ENSG00000236384
Ensembl Transcript ID: ENST00000412102
RefSeq ID: NR_027272
Location (hg38): chr21:41711520-41715775
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2033 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000412102; ENST00000412102.1; LINC00479-001; OTTHUMT00000195207.3; NONHSAT082274; NR_027272; ENST00000412102.5; NR_027272.1
Alternative gene names: ENSG00000236384; C21orf129; ENSG00000236384.2; LINC00479; OTTHUMG00000086773.4; ENSG00000236384.3; ENSG00000236384.7; PRED76; FLJ32835


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.5651 non-coding 
CPAT coding probability 44.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00479:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RIPK4-1:1
3.1 lnc-RIPK4-1:1
4.0 LINC00479:1
4.1 LINC00479:1
5.0 LINC00479:1
5.1 LINC00479:1
5.2 LINC00479:1