Transcript: LINC00479:2

Basic information

LNCipedia transcript ID: LINC00479:2 
HGNC Gene Symbol: LINC00479    
HGNC Full Gene Name: long intergenic non-protein coding RNA 479
Ensembl Gene ID: ENSG00000236384
Ensembl Transcript ID: ENST00000586552
Location (hg38): chr21:41712856-41715753
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 292 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT082278; ENST00000586552.1; ENST00000586552.5
Alternative gene names: ENSG00000236384.3; LINC00479; ENSG00000236384.7; PRED76; FLJ32835


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.8003 non-coding 
CPAT coding probability 19.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00479:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RIPK4-1:4
4.0 LINC00479:2
4.1 LINC00479:2
5.0 LINC00479:2
5.1 LINC00479:2
5.2 LINC00479:2