Transcript: LINC00484:16

Basic information

LNCipedia transcript ID: LINC00484:16 
LNCipedia gene ID: LINC00484
Ensembl Gene ID: ENSG00000229694
Ensembl Transcript ID: ENST00000421595
Location (hg38): chr9:91182057-91182717
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421595; ENST00000421595.1; RP11-305L7.6-004; OTTHUMT00000053030.1; NONHSAT133126
Alternative gene names: ENSG00000229694; RP11-305L7.6; ENSG00000229694.1; OTTHUMG00000020205.1; ENSG00000229694.2; ENSG00000229694.6; ; LINC00484


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.8447 non-coding 
CPAT coding probability 6.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00484:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYK-4:4
3.1 lnc-SYK-5:4
4.0 LINC00484:16
4.1 LINC00484:16
5.0 LINC00484:16
5.1 LINC00484:16
5.2 LINC00484:16