Transcript: LINC00486:12

Basic information

LNCipedia transcript ID: LINC00486:12 
HGNC Gene Symbol: LINC00486    
HGNC Full Gene Name: long intergenic non-protein coding RNA 486
Ensembl Gene ID: ENSG00000230876
Ensembl Transcript ID: ENST00000435075
RefSeq ID: NR_027100
Location (hg38): chr2:32882801-32926522
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1360 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002643; ENST00000435075; ENST00000435075.1; LINC00486-002; OTTHUMT00000325402.1; NR_027100; NR_027100.1
Alternative gene names: XLOC_001418; linc-LTBP1; ENSG00000230876; AL121656.4; ENSG00000230876.2; LINC00486; OTTHUMG00000152136.2; ENSG00000230876.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.1008 non-coding 
CPAT coding probability 10.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00486:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC27-1:11
3.1 lnc-TTC27-1:11
4.0 LINC00486:12
4.1 LINC00486:12
5.0 LINC00486:12
5.1 LINC00486:12
5.2 LINC00486:12