Transcript: LINC00486:17

Basic information

LNCipedia transcript ID: LINC00486:17 
LNCipedia gene ID: LINC00486
Ensembl Gene ID: ENSG00000236854
Ensembl Transcript ID: ENST00000440786
Location (hg38): chr2:32927127-32928405
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002867; ENST00000440786; ENST00000440786.1; AL121656.5-001; OTTHUMT00000325400.1; NONHSAT147080
Alternative gene names: XLOC_001418; linc-LTBP1; ENSG00000236854; AL121656.5; ENSG00000236854.1; OTTHUMG00000152135.1; ; AL121656.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.5383 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00486:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC27-1:14
3.1 lnc-TTC27-1:14
4.0 LINC00486:17
4.1 LINC00486:17
5.0 LINC00486:17
5.1 LINC00486:17
5.2 LINC00486:17