Transcript: LINC00486:3

Basic information

LNCipedia transcript ID: LINC00486:3 
LNCipedia gene ID: LINC00486
RefSeq ID: NR_027098
Location (hg38): chr2:32825443-32929139
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1991 bp
Exons: 6
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002641; NONHSAT069993; NR_027098; NR_027098.1
Alternative gene names: XLOC_001418; linc-LTBP1; ; LINC00486


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.5693 non-coding 
CPAT coding probability 10.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00486:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC27-1:3
3.1 lnc-TTC27-1:3
4.0 LINC00486:3
4.1 LINC00486:3
5.0 LINC00486:3
5.1 LINC00486:3
5.2 LINC00486:3