Transcript: LINC00486:9

Basic information

LNCipedia transcript ID: LINC00486:9 
HGNC Gene Symbol: LINC00486    
HGNC Full Gene Name: long intergenic non-protein coding RNA 486
Ensembl Gene ID: ENSG00000230876
Ensembl Transcript ID: ENST00000424364
Location (hg38): chr2:32841014-32902123
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 691 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424364; ENST00000424364.2; LINC00486-003; OTTHUMT00000325403.2; NONHSAT147078; ENST00000424364.6
Alternative gene names: ENSG00000230876; AL121656.4; ENSG00000230876.2; LINC00486; OTTHUMG00000152136.2; ENSG00000230876.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.5693 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00486:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC27-1:9
3.1 lnc-TTC27-1:8
4.0 LINC00486:9
4.1 LINC00486:9
5.0 LINC00486:9
5.1 LINC00486:9
5.2 LINC00486:9