Transcript: LINC00487:3

Basic information

LNCipedia transcript ID: LINC00487:3 
HGNC Gene Symbol: LINC00487    
HGNC Full Gene Name: long intergenic non-protein coding RNA 487
Ensembl Gene ID: ENSG00000205837
Ensembl Transcript ID: ENST00000424179
Location (hg38): chr2:6729168-6731226
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 602 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424179; ENST00000424179.1; LINC00487-002; OTTHUMT00000323347.1; NONHSAT068912; ENST00000424179.5
Alternative gene names: ENSG00000205837; AC079923.1; ENSG00000205837.3; LINC00487; OTTHUMG00000151630.2; ENSG00000205837.7; FLJ42418


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.4411 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00487:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CMPK2-3:3
3.1 lnc-CMPK2-3:3
4.0 LINC00487:3
4.1 LINC00487:3
5.0 LINC00487:3
5.1 LINC00487:3
5.2 LINC00487:3