Transcript: LINC00494:1

Basic information

LNCipedia transcript ID: LINC00494:1 
LNCipedia gene ID: LINC00494
Location (hg38): chr20:48355214-48366764
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 508 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00027941; ENST00000420477; ENST00000420477.1; LINC00494-003; OTTHUMT00000079619.1; NONHSAT080136
Alternative gene names: XLOC_013551; linc-ARFGEF2-4; ENSG00000235621; RP1-66N13.3; ENSG00000235621.3; LINC00494; OTTHUMG00000032682.1;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.2386 non-coding 
CPAT coding probability 3.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00494:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-3:1
3.1 lnc-ARFGEF2-3:1
4.0 LINC00494:1
4.1 LINC00494:1
5.0 LINC00494:1
5.1 LINC00494:1
5.2 LINC00494:1