Transcript: LINC00494:2

Basic information

LNCipedia transcript ID: LINC00494:2 
LNCipedia gene ID: LINC00494
RefSeq ID: NR_026958
Location (hg38): chr20:48359911-48370638
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3592 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027835; NONHSAT080139; NR_026958; NR_026958.1
Alternative gene names: XLOC_013551; linc-ARFGEF2-4; ; LINC00494

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.5623 non-coding 
CPAT coding probability 5.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00494:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-3:2
3.1 lnc-ARFGEF2-3:2
4.0 LINC00494:2
4.1 LINC00494:2
5.0 LINC00494:2
5.1 LINC00494:2
5.2 LINC00494:2