Transcript: LINC00494:4

Basic information

LNCipedia transcript ID: LINC00494:4 
HGNC Gene Symbol: LINC00494    
HGNC Full Gene Name: long intergenic non-protein coding RNA 494
Ensembl Gene ID: ENSG00000235621
Ensembl Transcript ID: ENST00000416742
Location (hg38): chr20:48359950-48370629
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3544 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000416742; ENST00000416742.1; LINC00494-004; OTTHUMT00000079620.1; ENST00000416742.5
Alternative gene names: ENSG00000235621; RP1-66N13.3; ENSG00000235621.3; LINC00494; OTTHUMG00000032682.1; ENSG00000235621.4; ENSG00000235621.8;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.5623 non-coding 
CPAT coding probability 5.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00494:4 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ARFGEF2-3:4
3.1 lnc-ARFGEF2-3:4
4.0 LINC00494:4
4.1 LINC00494:4
5.0 LINC00494:4
5.1 LINC00494:4
5.2 LINC00494:4