Transcript: LINC00507:5

Basic information

LNCipedia transcript ID: LINC00507:5 
HGNC Gene Symbol: LINC00507    
HGNC Full Gene Name: long intergenic non-protein coding RNA 507
Ensembl Gene ID: ENSG00000256193
Ensembl Transcript ID: ENST00000540882
Location (hg38): chr12:127915442-127951450
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1935 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540882; ENST00000540882.1; LINC00507-003; OTTHUMT00000399702.1; NONHSAT031887; ENST00000540882.5
Alternative gene names: ENSG00000256193; RP11-749H20.6; ENSG00000256193.1; LINC00507; OTTHUMG00000168425.1; ENSG00000256193.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.1096 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00507:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM132C-2:3
3.1 lnc-TMEM132C-2:3
4.0 LINC00507:5
4.1 LINC00507:5
5.0 LINC00507:5
5.1 LINC00507:5
5.2 LINC00507:5