Transcript: LINC00513:20

Basic information

LNCipedia transcript ID: LINC00513:20 
LNCipedia gene ID: LINC00513
Location (hg38): chr7:130927331-130928024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 586 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00013600
Alternative gene names: XLOC_006253; linc-MKLN1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.3334 non-coding 
CPAT coding probability 74.28% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00513:20 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MKLN1-1:5
3.1 lnc-MKLN1-1:5
4.0 lnc-MKLN1-1:5
4.1 lnc-MKLN1-1:5
5.0 lnc-MKLN1-1:5
5.1 LINC00513:10
5.2 LINC00513:20