Transcript: LINC00513:21

Basic information

LNCipedia transcript ID: LINC00513:21 
LNCipedia gene ID: LINC00513
Ensembl Gene ID: ENSG00000273319
Ensembl Transcript ID: ENST00000608412
Location (hg38): chr7:130936464-130939661
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3198 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608412.1
Alternative gene names: ENSG00000273319.1; RP11-138A9.2; AC058791.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.071 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00513:21 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MKLN1-1:10
4.0 lnc-MKLN1-1:10
4.1 lnc-MKLN1-1:10
5.0 lnc-MKLN1-1:10
5.1 LINC00513:11
5.2 LINC00513:21