Transcript: LINC00518:4

Basic information

LNCipedia transcript ID: LINC00518:4 
LNCipedia gene ID: LINC00518
RefSeq ID: NR_027793
Location (hg38): chr6:10427785-10434822
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3018 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00011130; NONHSAT107684; NR_027793; NR_027793.1
Alternative gene names: XLOC_005602; linc-TFAP2A-2; MGC40222; LINC00518


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.3726 non-coding 
CPAT coding probability 4.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00518:4 no no no no

Available literature

  1. Gerami (2014), Development of a novel noninvasive adhesive patch test for the evaluation of pigmented lesions of the skin., J. Am. Acad. Dermatol.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TFAP2A-2:4
3.1 lnc-TFAP2A-2:4
4.0 LINC00518:4
4.1 LINC00518:4
5.0 LINC00518:4
5.1 LINC00518:4
5.2 LINC00518:4