Transcript: LINC00518:6

Basic information

LNCipedia transcript ID: LINC00518:6 
HGNC Gene Symbol: LINC00518    
HGNC Full Gene Name: long intergenic non-protein coding RNA 518
Ensembl Gene ID: ENSG00000183674
Ensembl Transcript ID: ENST00000472178
Location (hg38): chr6:10429709-10434495
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 853 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000472178; TCONS_00011448; ENST00000472178.1; LINC00518-005; OTTHUMT00000353703.1; NONHSAT107686
Alternative gene names: ENSG00000183674; XLOC_005602; linc-TFAP2A-2; RP1-290I10.8; ENSG00000183674.7; LINC00518; OTTHUMG00000159175.1; ENSG00000183674.11; MGC40222


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -159.6189 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00518:6 no no no no

Available literature

  1. Gerami (2014), Development of a novel noninvasive adhesive patch test for the evaluation of pigmented lesions of the skin., J. Am. Acad. Dermatol.
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TFAP2A-2:6
3.1 lnc-TFAP2A-2:6
4.0 LINC00518:6
4.1 LINC00518:6
5.0 LINC00518:6
5.1 LINC00518:6
5.2 LINC00518:6