Transcript: LINC00523:2

Basic information

LNCipedia transcript ID: LINC00523:2 
HGNC Gene Symbol: LINC00523    
HGNC Full Gene Name: long intergenic non-protein coding RNA 523
Ensembl Gene ID: ENSG00000196273
Ensembl Transcript ID: ENST00000360899
RefSeq ID: NR_024096
Location (hg38): chr14:100657268-100672744
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1627 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00022332; ENST00000360899; ENST00000360899.2; LINC00523-002; OTTHUMT00000414341.1; NONHSAT039717; NR_024096; NR_024096.1
Alternative gene names: XLOC_010930; linc-DLK1-2; ENSG00000196273; RP11-566J3.1; ENSG00000196273.3; LINC00523; OTTHUMG00000171592.1; ENSG00000196273.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7486 non-coding 
CPAT coding probability 65.92% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00523:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DLK1-3:2
3.1 lnc-DLK1-3:2
4.0 LINC00523:2
4.1 LINC00523:2
5.0 LINC00523:2
5.1 LINC00523:2
5.2 LINC00523:2